Showing posts with label LISP. Show all posts
Showing posts with label LISP. Show all posts

Saturday, November 24, 2012

How to Lose List Brackets in Mathematica

First, Apply, Sequence, ReplaceAll


There come times in every Mathematica user's life when the all-pervasive List brackets get in the way. Sometimes it's easy to redesign the function to accept the arguments in a List. Here are other solutions.

First

For a single element enclosed by brackets, you can use First to extract the element. In this example, since all Mathematica arithmetic functions are Listable (they will automatically Map over a List) we specify that the argument must be an Integer so the function will fail.

enclosed1={2};
Clear@function1;function1@x_Integer:=x^3;
function1@enclosed1

function1[{2}]

function1@First@enclosed1

8

Apply

First, see if you can use Apply @@ to apply a function to the contents of your List. Apply will replace the List head with your desired function and Evaluate it.

In[107]:=  Range@15
Out[107]=  {1,2,3,4,5,6,7,8,9,10,11,12,13,14,15}

In[108]:=  Plus@@%
Out[108]=  120

Here's a single filename that is unnecessarily surrounded by List brackets. It's a String, so we just Apply ToString to it. It then stands alone – no List brackets – but its Head is String.

FileNames[]

{TableFiredFibers-Control-CathodeOnly-0p644.txt}

ToString@@%141

TableFiredFibers-Control-CathodeOnly-0p644.txt

Head@%
String

FullForm@%%
"TableFiredFibers-Control-CathodeOnly-0p644.txt"

Sequence

Mathematica was designed as a list processing language in which the list is the fundamental data structure. Allan Newell's IPL (Information Processing Language) was the original prototype, after which John McCarthy coupled the list as a universal data structure with the lambda calculus and logic functions into the major programming language, LISP.

We can Apply Sequence to a List to replace List as the container (the Head). Here are two examples, first to a single List, then to a List of Lists.

In[115]:= Sequence@@{0,4}

Out[115]= Sequence[0,4]

In[119]:= Sequence@@{{0,1,1},{0,2},{0,1,3},{0,4}}

Out[119]= Sequence[{0,1,1},{0,2},{0,1,3},{0,4}]

FileNameJoin is the safe way to assemble filepaths in Mathematica since it knows your operating system syntax. However FileNameJoin only accepts a single-level List as its argument. To feed it a nested List, use Sequence instead of List as the Head of the inner List.

In[350]:= twoPathElements={"webPages","index.html"};

In[351]:= FileNameJoin@{$HomeDirectory,twoPathElements}

Out[351]= FileNameJoin[{C:\Users\kwcarlso,{webPages,index.html}}]

Since it didn't see a List of Strings (filepath names) as the correct argument types, FileNameJoin returned the input. Using Sequence solves this.

In[352]:= twoPathElements=Sequence["webPages","index.html"];

In[353]:= FileNameJoin@{$HomeDirectory,twoPathElements}

Out[353]= C:\Users\kwcarlso\webPages\index.html

The context of one function I use to illustrate Sequence is worth mentioning (but skip this to get to more usages of Sequence). I have digitally sampled a curve from the literature (a paper by Holsheimer from 1999) in the graphing program Origin. In other words, you can import an image, in this case a graph for which Holsheimer doesn't give either the underlying data or an equation, and repeatedly click on it to harvest {x,y} values. We captured 163 sample points on the solid curve below, which is a vast improvement on the antiquated method of using a straightedge to pick up x and y values off the axes.


With that many sample points, finding the x value closest to the one desired is a reasonable alternative to fitting a curve and applying the fit equation to values you wish to interpolate or extrapolate.

So this is a function to find the nearest x value (a neuron axon diameter, fiberDiameter) to one for which we want to know the threshold as determined by Holsheimer (which is the y-value retrieved). The problem is Nearest returns values in List brackets, which don't match the un-bracketed x values in the List of data. Applying Sequence to the result of Nearest feeds the unbracketed value to Cases, which then performs the match.

Clear@diameterThreshold; diameterThreshold[fiberDiameter_, fiberThresholdSourceData_:holsheimerData1999] := Cases[fiberThresholdSourceData, {x_, y_} /; x == Sequence@@Nearest[fiberThresholdSourceData[[All, 1]], fiberDiameter] ]

So in sum this function says: Clear the function name (which I do habitually at the start of a function definition to prevent accidentally testing a previous version as I revise it). Then define it as the Cases in the source data file (fiberThresholdSourceData--default to the holsheimerData1999 file unless I specify another file) such that ( /; ) the x-value is Nearest to the fiberDiameter parameter I give it.

ReplaceAll

Here is a third way using rule patterns.

In[128]:= {{0,1,1},{0,2},{0,1,3},{0,4}}/. List[a__] ->a

Out[128]= Sequence[{0,1,1},{0,2},{0,1,3},{0,4}]